File List

Here is a list of all files with brief descriptions:

[detail level 12345]

▼ examples
► robert
robert.cpp
► straka
make_plots.py
straka.cpp
pages
▼ src
► astro
► Jupiter
jup_fletcher16_cirs.cpp
jup_fletcher16_cirs.hpp
► Saturn
sat_lindal92.cpp
sat_lindal92.hpp
celestrial_body.cpp
celestrial_body.hpp
get_gravity.cpp
planets.cpp
planets.hpp
► c3m
chemistry.cpp
chemistry.hpp
► climath
band_back_sub.c
band_decomp.c
band_improve.c
band_multiply.c
core.h
fcmp.c
find_place_in_table.c
gamma.c
interpn.c
interpnf.c
interpolation.h
leastsq.c
linalg.h
linalg_inline.hpp
locate.c
lubksb.c
ludcmp.c
mvdot.c
root.c
root.h
root.hpp
special.h
spline.c
tridiag.c
vvdot.c
► exchanger
exchanger.cpp
exchanger.hpp
linear_exchanger.hpp
message_traits.cpp
message_traits.hpp
neighbor_exchanger.hpp
► exo3
affine_coordinate.cpp
affine_coordinate.hpp
cubed_sphere.hpp
gnomonic_equiangle.hpp
► harp
radiation.cpp
radiation.hpp
radiation_band.cpp
radiation_band.hpp
radiation_band_exchanger.cpp
rt_solver_disort.cpp	Call DISORT to perform radiative transfer calculation
rt_solver_disort_flags.cpp
rt_solver_lambert.cpp
rt_solvers.hpp
set_spectral_properties.cpp
spectral_grid.cpp
spectral_grid.hpp
► integrator
integrators.cpp	Contains the implementation of the integrators
integrators.hpp
► inversion
concentration_inversion.cpp
concentration_inversion.hpp
gaussian_process.cpp
gaussian_process.hpp
inversion.cpp
inversion.hpp
juno_profile_inversion_target.cpp
mcmc.cpp
mcmc.hpp	This file contains data structure and subroutines implementing Markov Chain Monte Carlo sampler
mcmc_init.cpp
mcmc_step.cpp
profile_inversion.cpp
profile_inversion.hpp
profile_inversion_posterior.cpp
profile_inversion_prior.cpp
vla_profile_inversion_target.cpp
► microphysics
chemistry_solver.hpp
kessler94.cpp
microphysical_schemes.cpp
microphysical_schemes.hpp
microphysics.cpp	Implementation of the Microphysics class
microphysics.hpp
► nbody
► z.to_do
particle_exchanger.cpp
particle_exchanger.hpp
particles.cpp
particulate.cpp
simple_cloud_particles.cpp
two_phase_cloud_particles.cpp
nbody_inbound.cpp	Implementations of inbound functions to particle
nbody_interaction.hpp
particle_data.cpp	Implementation of functions in class ParticleData
particle_data.hpp
particle_exchanger.cpp	Implements functions derived from class NeighborExchanger
particle_integrator.cpp	Implements functions derived from clas MultistageTimeIntegrator
particle_outputs.cpp	Output functions for particles
particle_restart.cpp	Implements functions derived from clas RestartGroup
particle_to_mesh.cpp
particles.cpp	Implements class ParticleBase and helper functions
particles.hpp
► opacity
► Giants
► microwave
absorption_function_cloud.cpp
absorption_function_ph3.cpp
absorption_functions.hpp
attenuation_cia.cpp
attenuation_electron.cpp
attenuation_h2o.cpp
attenuation_h2s.cpp
attenuation_nh3.cpp
mwr_absorber_cia.cpp
mwr_absorber_cia.hpp
mwr_absorber_electron.cpp
mwr_absorber_h2o.cpp
mwr_absorber_h2s.cpp
mwr_absorber_h2s.hpp
mwr_absorber_nh3.cpp
mwr_absorber_nh3.hpp
mwr_absorber_ph3.cpp
mwr_absorber_ph3.hpp
mwr_absorbers.hpp	This file contains declaration of Absorber
freedman.hpp
freedman_mean.cpp
freedman_mean2.cpp
freedman_simple.cpp
freedman_simple2.cpp
hydrogen_cia.hpp
xiz_h2h2_cia.cpp
xiz_h2he_cia.cpp
absorber.cpp
absorber.hpp
absorber_factory.cpp
correlatedk_absorber.cpp
correlatedk_absorber.hpp
fu_waterice_cloud.cpp
fu_waterliquid_cloud.cpp
hitran_absorber.cpp
hitran_absorber.hpp
nitrogen_cia.cpp
nitrogen_cia.hpp
oxygen_cia.cpp
oxygen_cia.hpp
simple_cloud.cpp
water_cloud.hpp
xu_waterice_cloud.cpp
► outputs
combine_blocks.cpp
debug.cpp
fits.cpp	Writes output data in FITS format (for inversion tasks)
load_user_output_data.cpp
mppnccombine.cpp
netcdf.cpp
output_utils.cpp
output_utils.hpp
pnetcdf.cpp
► physics
heating_cooling.cpp
physics.cpp
physics.hpp
qe_moist_convection.f90
register_package.cpp
relax_bot_temperature.cpp
sponge_layer.cpp
► snap
► decomposition
apply_boundary_condition.cpp
change_to_buoyancy.cpp
change_to_entropy.cpp
change_to_perturbation.cpp
decomposition.cpp
decomposition.hpp
► diagnostics
angular_momentum.cpp	Implement total mass, moment of inertia, axial angular momentum output (am)
buoyancy.cpp
convective_heat_flx.cpp
curl.cpp
diagnostics.cpp
diagnostics.hpp
divergence.cpp
eddy_flux.cpp
eddy_kinetic_energy.cpp	Implement eddy kinetic energy and mean kinetic energy output (eke)
horizontal_divergence.cpp
hydro_mean.cpp
latent_heating.cpp
pressure_anomaly.cpp
radiative_flux.cpp
temperature_anomaly.cpp
tendency.cpp
total_flux.cpp
► eos
apply_vapor_limiter.cpp
check_hydro_variables.cpp
eos_helper.hpp
ideal_moist_hydro.cpp
shallow_xy_hydro.cpp
shallow_yz_hydro.cpp
► forcing
coriolis_acc.cpp
► implicit
communication.hpp
flux_decomposition.hpp
forcing_jacobians.hpp
forward_backward.hpp
full_correction.cpp
implicit_solver.cpp
implicit_solver.hpp
partial_correction.cpp
periodic_forward_backward.hpp
► riemann
lmars.cpp
lmars_shallow_yz.cpp
roe_shallow_xy.cpp
roe_shallow_yz.cpp
► thermodynamics
► vapors
ammonia_vapors.hpp
ammonium_hydrosulfide_vapors.hpp
fit_ammonia.py
hydrogen_sulfide_vapors.hpp
methane_vapors.hpp
potassium_vapors.hpp
sodium_vapors.hpp
water_vapors.hpp
cal_dlnT_dlnP.cpp
enroll_vapor_functions.cpp
equilibrate_tp.cpp
helium_thermo.cpp
hydrogen_thermo.cpp
ionization.cpp
methane_thermo.cpp
molecules.cpp
molecules.hpp
read_thermo_property.cpp
rk4_integrate_lnp.cpp
rk4_integrate_z.cpp
saturation_adjustment.cpp
thermodynamics.cpp
thermodynamics.hpp
try_equilibrium_tp_vapor_cloud.cpp
try_equilibrium_tp_vapor_vapor_cloud.cpp
► turbulence
k_epsilon_turbulence.cpp
turbulence_model.cpp
turbulence_model.hpp
► special
giants_enroll_vapor_functions_v1.hpp
► tasklist
extra_tasks.hpp
implicit_hydro_tasks.cpp
inversion_tasks.cpp
► tracer
tracer.cpp
tracer.hpp
► transport
Advection.h
Boundary.h
Diffusion.h
Kinetics.cc
Kinetics.h
RectGrid.h
stream_transport.cpp
stream_transport.hpp
Variable.h
► utils
extract_substring.cpp
extract_substring.hpp
fileio.cpp
fileio.hpp
ndarrays.hpp
read_data_table.cpp
vectorize.cpp
vectorize.hpp
air_parcel.cpp
air_parcel.hpp
common.hpp
constants.hpp
dirty.hpp	Dirty.hpp contains dirty functions that should go somewhere else
impl.cpp
impl.hpp
index_map.cpp
index_map.hpp
mesh_destroy.cpp
mesh_setup.cpp
schedulers.cpp	Implementation of scheduler
schedulers.hpp
virtual_groups.hpp